Home About Us Writing a Scientific Article Author's Instruction Contact us
 

MERIT RESEARCH JOURNAL OF MICROBIOLOGY AND BIOLOGICAL SCIENCES (MRJMBS) (ISSN:2408-7076)

 
 

/  /    MRJMBS Home   /   /    About MRJMBS    /  /    Submit Manuscripts    /  /      Call For Articles      / /     Editorial Board     / /    Archive     / /    Author's Guide  /  /

 
 


May 2018 Vol.6 No.4

Other viewing option


Abstract
• Full text
Reprint (PDF) (1007 KB)


Search Pubmed for articles by:
 

Saif R
Tamseel T

Other links:
PubMed Citation
Related articles in PubMed





































 

 

Merit Research Journal of Microbiology and Biological Sciences (ISSN: 2408-7076) Vol. 6(4) pp. 043-053, May, 2018

Copyright © 2018 Merit Research Journals

Original Research Article

Computational Proteomic Data Mining of Heat Shock Protein-β1 using Mathematica Software

 
 
 

Rashid Saif1, 2*, Saeeda Zia2, 3, Kinza Qazi4, Tania Mahmood1, Fatima Asif1, Aniqa Ejaz1 and Talha Tamseel4

 

1Institute of Biotechnology, Gulab Devi Educational Complex, Ferozepur Road, Lahore, Pakistan
2Decode Genomics, 264-Q, Johar Town, Lahore, Pakistan
3Department of Mathematics, National University of Computer and Emerging Sciences, Lahore, Pakistan
4Department of Bioinformatics and Computational Biology, Virtual University of Pakistan, Lahore, Pakistan

*Corresponding Author’s E-mail: rashid.saif37@gmail.com

Accepted April 02, 2018

 

Abstract

 

Omics data mining approach helps us to discover the hidden patterns of today’s molecular life. Current study is conducted to compare and analyze 75 homologous Hspb1 protein sequences from distinct 62 species. Multiple sequence alignment and phylogenetic analysis are performed which revealed that, the fungi, bacteria, plants, human and other mammals appeared in different clades on the basis of orthology and paralogy being used through Mathematica software. Sequence based clustering analysis and physiochemical properties are observed which might serve as an alternative technique to characterize the protein further. Structure and motif analysis are also examined to have insight of conserved domains of this protein, similarly, orthology of human Hspb1 presented optimal alignment scores which demonstrate important characteristics of this protein. Hspb1 interacting network and pathway analysis are also analyzed with other proteins through the built-in Mathematica algorithms through gene expression enrichment scores. This tool may be further use to analyze the bigger genomics, transcriptomics and metabolomics dataset to check the reliability of clustering algorithm of this software with other contemporary packages in the field of bioinformatics and computational biology.

Keywords: Mathematica, Cluster analysis, Proteomic data mining, Orthology, Network and Pathway analysis, Gene expression enrichment scores


























 
 









 
 

 
 
   
   
   
   
   
   
   
   
   
   
   
 
 
 
 
 
 
 
 
   
 
                         

Merit Research Journals© 2018 || Advertisement | Privacy policy.